data/02-raw/.gitignore

data/03-processed/.gitignore

data/04-analyzed/.gitignore

notebooks/4.0 Results (paper) twist-angles.ipynb

notebooks/4.0 Results INT (paper) twist-angles.ipynb

notebooks/5.0 SI CG comparison.ipynb

notebooks/Tests.ipynb

notebooks/Twist-Writhe-test.ipynb

src/analysis/CG_INT.py

src/analysis/analyze_trajectories_INT.py

src/analysis/analyze_trajectories_parallel.py

src/analysis/analyze_trajectories_twisted_bb.py

src/analysis/compute_local_props_intersec.py

src/ror/abstract_CG.py

src/ror/analysis_pipeline.py

src/ror/backbone_analyses.py

src/ror/ribbon.py

src/ror/templates/template_rings_restart.lmp

src/scripts/create_restart.sh

src/scripts/create_restart_scheduler.sh